Lihimi Ŋun su:Jts1882/sandbox/templates/CladeN/doc ni yi shɛli na

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== Description ==

This is a experimental version of the clade template, using a Lua module to create the tables.

[[Module:Sandbox/Jts1882/CladeN]]

== Basic usage ==

The new template should exactly replicate the use of the Clade and cladex templates.

===Clade features===

* Terminal nodes (leaves) with ''|N''=leafname
* New clades with ''|N''=clade<nowiki>{{ ... }}</nowiki>
* Internal node labelling with ''labelN''
* Dashed or dotted lines on branches (''stateN'' applied to branch N)
* Different thickness on node brackets (''thickness'' applied to the clade)

===Cladex features===

* Double lines on branches to denote polyphyly/paraphyly (''|stateN''=double)
* Coloured bars to right of taxa to indicate groups (e.g paraphyly) (''barN'', ''barbeginN'', ''barendN'')

==New or extended features==

===Branch and clade styling===
* Styling of dashed/dotted lines and thickness extended to both clade and branch levels
** ''stateN'' and ''ThicknessN'' change just the branch
** ''state'' and ''thickness'' change the clade (the bracket)
** note: they apply only to a single clade level; they don't extend down the tree
* Colour option for line styling (using ''color'' and ''colorN'')
* CSS styling of branches and clades through use of ''styleN'' or ''style'', respectively
** For instance, ''|styleN''=background-color:green; adds a background color to the node or clade. 
** Because it uses CSS, the colours propagate through the table structure and changing the colour on a branch with ''styleN'' will apply the background to all subtrees.
** You cannot used this to change the tree structure because that uses HTML border-style, border-width and border-color, which are controlled with ''state'', ''thickness'' and ''color'', respectively (see above)

===Newick strings===

* Newick strings can be used instead of clade to extend the tree, although styling options are limited with this method.
** E.g. ''|newick1''=(lion,tiger)panthera
** This feature is limited to simple strings. The current parser doesn't strip out additional information (e.g. lengths after colons). 
** Beware of spaces. Don't use spaces adjacent to the newick string delimiters (parentheses, commas), although they can be used in the taxon names.
* If more options are required, the trees can be converted to the clade structure using the [[User:Jts1882/sandbox/templates/NewickConverter|NewickConverter]] template

===Caption, footer description and group labels===
* Group labels to provide additional information (generally used with the bar structure)
** use ''grouplabel'' to add the text of the label
** use ''labelstyle'' to apply CSS styling
* Captions and a footer description can be added (similar to cladogram)
** ''caption'' and ''captionstyle'' add a CSS styled caption to the top of diagram
** ''footer'' and ''footerstyle'' add a CSS styled description below the diagram

===Demonstration illustrating features===


{{User:Jts1882/sandbox/test/Newick tree}}

==Examples==

{{User:Jts1882/sandbox/test/Felidae}}

=== More examples ===

[[User:Jts1882/sandbox/templates/Template:Passerida]]

[[User:Jts1882/sandbox/templates/Template:Passerida]]

[[User:Jts1882/sandbox/templates/Template:Passeroidea]]

[[User:Jts1882/sandbox/templates/Template:APG_III_system]]



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